Installation

Warning

panCT is still under construction and has not yet been published to PyPI or bioconda, so it cannot yet be installed through pip or conda. We will leave these docs here for later.

Using pip

You can install panct from PyPI using pip.

Note

We recommend using pip >= 20.3.

pip install 'pip>=20.3'

pip install panct

Using conda

We also support installing panct from bioconda using conda.

conda install -c conda-forge -c bioconda panct

Installing the latest, unreleased version

Can’t wait for us to tag and release our most recent updates? You can install panct directly from the main branch of our Github repository using pip.

pip install --upgrade --force-reinstall git+https://github.com/cast-genomics/panct.git

Development installation

If you would like to edit and work with the panCT source code, please refer to these instructions for installation.